Duari S, Gautam V, Ahuja G. Protocol for cellular age prediction in yeast and human single cells using transfer learning. STAR Protoc. 2025 Sep 19;6(3):104023. doi: 10.1016/j.xpro.2025.104023. Epub 2025 Aug 11. PMID: 40794494; PMCID: PMC12357082.

Arora S, Mittal A, Duari S, Chauhan S, Dixit NK, Mohanty SK, Sharma A, Solanki S, Sharma AK, Gautam V, Gahlot PS, Satija S, Nanshi J, Kapoor N, Cb L, Sengupta D, Mehrotra P, Ghosh TS, Ahuja G. Discovering geroprotectors through the explainable artificial intelligence-based platform AgeXtend. Nat Aging. 2025 Jan;5(1):144-161. doi: 10.1038/s43587-024-00763-4. Epub 2024 Dec 3. PMID: 39627462.

Gautam V, Duari S, Solanki S, Gupta M, Mittal A, Arora S, Aggarwal A, Sharma AK, Tyagi S, Pankajbhai RK, Sharma A, Chauhan S, Satija S, Kumar S, Mohanty SK, Tayal J, Dixit NK, Sengupta D, Mehta A, Ahuja G. scCamAge: A context-aware prediction engine for cellular age, aging-associated bioactivities, and morphometrics. Cell Rep. 2025 Feb 25;44(2):115270. doi: 10.1016/j.celrep.2025.115270. Epub 2025 Feb 6. PMID: 39918957.

Gupta K, Yadav P, Maryam S, Ahuja G*, Sengupta D*. Quantification of Age-Related Decline in Transcriptional Homeostasis. J Mol Biol. 2021 Sep 17;433(19):167179. doi: 10.1016/j.jmb.2021.167179. Epub 2021 Jul 30. PMID: 34339725.

Mittal A, Mohanty SK, Gautam V, Arora S, Saproo S, Gupta R, Sivakumar R, Garg P, Aggarwal A, Raghavachary P, Dixit NK, Singh VP, Mehta A, Tayal J, Naidu S, Sengupta D, Ahuja G. Artificial intelligence uncovers carcinogenic human metabolites. Nat Chem Biol. 2022 Nov;18(11):1204-1213. doi: 10.1038/s41589-022-01110-7. Epub 2022 Aug 11. PMID: 35953549.

Mittal A, Ahuja G. Advancing chemical carcinogenicity prediction modeling: opportunities and challenges. Trends Pharmacol Sci. 2023 Jul;44(7):400-410. doi: 10.1016/j.tips.2023.04.002. Epub 2023 May 12. PMID: 37183054.

Mohanty Sanjay Kumar, Mittal Aayushi, Namra , Gaur Aakash, Duari Subhadeep, Solanki Saveena, Sharma Anmol Kumar, Arora Sakshi, Kumar Suvendu, Gautam Vishakha, Dixit Nilesh Kumar, Subramanian Karthika, Ghosh Tarini Shankar, Sengupta Debarka, Gupta Shashi Kumar, Murugan Natarajan Arul, Sharma Deepak, Ahuja Gaurav (2025) Deep Learning Reveals Endogenous Sterols as Allosteric Modulators of the GPCR-Gα Interface eLife 14:RP106397

Gupta R, Mittal A, Agrawal V, Gupta S, Gupta K, Jain RR, Garg P, Mohanty SK, Sogani R, Chhabra HS, Gautam V, Mishra T, Sengupta D, Ahuja G. OdoriFy: A conglomerate of artificial intelligence-driven prediction engines for olfactory decoding. J Biol Chem. 2021 Aug;297(2):100956. doi: 10.1016/j.jbc.2021.100956. Epub 2021 Jul 12. PMID: 34265305; PMCID: PMC8342790.

Kalra S, Mittal A, Gupta K, Singhal V, Gupta A, Mishra T, Naidu S, Sengupta D, Ahuja G. Analysis of single-cell transcriptomes links enrichment of olfactory receptors with cancer cell differentiation status and prognosis. Commun Biol. 2020 Sep 11;3(1):506. doi: 10.1038/s42003-020-01232-5. PMID: 32917933; PMCID: PMC7486295.

Gautam V, Mittal A, Kalra S, Mohanty SK, Gupta K, Rani K, Naidu S, Mishra T, Sengupta D, Ahuja G. EcTracker: Tracking and elucidating ectopic expression leveraging large-scale scRNA-seq studies. Brief Bioinform. 2021 Nov 5;22(6):bbab237. doi: 10.1093/bib/bbab237. PMID: 34184038.

Chawla S, Rockstroh A, Lehman M, Ratther E, Jain A, Anand A, Gupta A, Bhattacharya N, Poonia S, Rai P, Das N, Majumdar A, Jayadeva, Ahuja G, Hollier BG, Nelson CC, Sengupta D. Gene expression based inference of cancer drug sensitivity. Nat Commun. 2022 Sep 27;13(1):5680. doi: 10.1038/s41467-022-33291-z. PMID: 36167836; PMCID: PMC9515171.

Frank S*, Ahuja G*, Bartsch D*, Russ N, Yao W, Kuo JC, Derks JP, Akhade VS, Kargapolova Y, Georgomanolis T, Messling JE, Gramm M, Brant L, Rehimi R, Vargas NE, Kuroczik A, Yang TP, Sahito RGA, Franzen J, Hescheler J, Sachinidis A, Peifer M, Rada-Iglesias A, Kanduri M, Costa IG, Kanduri C, Papantonis A, Kurian L. yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs. Cell Stem Cell. 2019 Feb 7;24(2):318-327.e8. doi: 10.1016/j.stem.2018.11.005. Epub 2018 Dec 13. PMID: 30554961.